Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0758225.1a with 168 members (myosin binding protein)

Chordata / Vertebrata /

Completeness score: 0.97

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

50.2%

This HOG has 7265 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0761039	Bilateria	1250		64.2%	10
HOG:E0761044	Bilateria	1019		54.2%	10
HOG:E0778237	Eumetazoa	728		39.7%	10
HOG:E0779447	Eumetazoa	709		50.5%	10
HOG:E0790558	Metazoa	605		48.9%	10
HOG:E0779964	Eumetazoa	489		49.7%	10
HOG:E0784231	Eumetazoa	440		78.9%	10
HOG:E0761094	Bilateria	324		71.3%	10
HOG:E0761318	Bilateria	289		8.7%	10
HOG:E0802256	Eukaryota	237		6.8%	10
HOG:E0761374	Bilateria	235		3.8%	10
HOG:E0746103	Gnathostomata	217		40.1%	10
HOG:E0753929	Vertebrata	213		14.1%	10
HOG:E0752326	Vertebrata	212		44.8%	10
HOG:E0752350	Vertebrata	211		79.6%	10
HOG:E0752573	Vertebrata	199		14.1%	10
HOG:E0746779	Gnathostomata	190		56.8%	10
HOG:E0818175	Eukaryota	184		8.7%	10
HOG:E0746995	Gnathostomata	182		19.8%	10
HOG:E0746099	Gnathostomata	159		71.7%	10
HOG:E0795702	Opisthokonta	155		15.5%	10
HOG:E0746141	Gnathostomata	154		52.6%	10
HOG:E0754283	Vertebrata	146		84.9%	10
HOG:E0748916	Gnathostomata	140		85.0%	10
HOG:E0755929	Chordata	136		34.6%	10

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